chr1:11800285:G>T Detail (hg38) (MTHFR)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
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Information

Genome

Assembly	Position
hg19	chr1:11,860,342-11,860,342 View the variant detail on this assembly version.
hg38	chr1:11,800,285-11,800,285

HGVS

MTHFR

Type	Transcript	Protein
RefSeq	NM_005957.4:c.513C>A	NP_005948.3:p.Gly171=
Ensemble	ENST00000376583.7:c.636C>A	ENST00000376583.7:p.Gly212=
	ENST00000376585.6:c.636C>A	ENST00000376585.6:p.Gly212=
	ENST00000376590.9:c.513C>A	ENST00000376590.9:p.Gly171=
	ENST00000376592.6:c.513C>A	ENST00000376592.6:p.Gly171=
	ENST00000423400.7:c.633C>A	ENST00000423400.7:p.Gly211=
	ENST00000641407.1:c.513C>A	ENST00000641407.1:p.Gly171=

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

JP	HGVD:[No Data.]
	ToMMo:[No Data.]
	NCBN:[No Data.]
	NCBN(Hondo):[No Data.]
	NCBN(Ryukyu):[No Data.]
East asia	ExAC:<0.001

Prediction

ClinVar

Clinical Significance	Likely benign
Review star
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Links

MTHFR

Type	Database	ID	Link
Gene	MIM	607093	OMIM
	HGNC	7436	HGNC
	Ensembl	ENSG00000177000	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Likely benign	2024-01-24	criteria provided, single submitter	Homocystinuria due to methylene tetrahydrofolate reductase deficiency	germline	Detail
Likely benign	2022-05-02	criteria provided, single submitter	MTHFR-related disorder	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.107	colorectal cancer	Three SNPs were shown to increase CRC risk: PTGS1 c.639C>A (p.Gly213Gly), IL8...	BeFree	18992148	Detail
0.026	colorectal cancer	Three SNPs were shown to increase CRC risk: PTGS1 c.639C>A (p.Gly213Gly), IL8...	BeFree	18992148	Detail
0.011	colorectal cancer	Three SNPs were shown to increase CRC risk: PTGS1 c.639C>A (p.Gly213Gly), IL8...	BeFree	18992148	Detail

Annotation

Annotations

Descrption	Source	Links
NM_005957.5(MTHFR):c.513C>A (p.Gly171=) AND Homocystinuria due to methylene tetrahydrofolate reducta...	ClinVar	Detail
NM_005957.5(MTHFR):c.513C>A (p.Gly171=) AND MTHFR-related disorder	ClinVar	Detail
Three SNPs were shown to increase CRC risk: PTGS1 c.639C>A (p.Gly213Gly), IL8 c.-352T>A, and M...	DisGeNET	Detail
Three SNPs were shown to increase CRC risk: PTGS1 c.639C>A (p.Gly213Gly), IL8 c.-352T>A, and M...	DisGeNET	Detail
Three SNPs were shown to increase CRC risk: PTGS1 c.639C>A (p.Gly213Gly), IL8 c.-352T>A, and M...	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs150963282 dbSNP
Genome: hg38
Position: chr1:11,800,285-11,800,285
Variant Type: snv
Reference Allele: G
Alternative Allele: T
East Asian Chromosome Counts (ExAC): 8654
East Asian Allele Counts (ExAC): 0
East Asian Heterozygous Counts (ExAC): 0
East Asian Homozygous Counts (ExAC): 0
East Asian Allele Frequency (ExAC): 0.0
Chromosome Counts in All Race (ExAC): 121412
Allele Counts in All Race (ExAC): 13
Heterozygous Counts in All Race (ExAC): 13
Homozygous Counts in All Race (ExAC): 0
Allele Frequency in All Race (ExAC): 1.0707343590419399E-4

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